Comprehensive analysis methods
A curated method set covers the whole workflow: normalization, alpha/beta diversity, differential abundance, network analysis, machine learning, functional prediction, niche analysis, multi-omics integration and more.
MICROBIOME MULTI-OMICS ANALYSIS
MecoToolkit
Interactive microbiome multi-omics analysis — a comprehensive collection of methods.
MecoToolkit brings the complete microbiome downstream analysis workflow into one interactive app. Import and analyse 16S / ITS / metagenomic / metabolomic / transcriptomic data through a point-and-click interface — no programming required.
- Free for personal use
- Cross-platform
Capabilities
Flexible data import and export
Import QIIME2, Excel, TSV, RData and other input data types, and export processed data and analysis results in a range of formats. Nothing is uploaded to the cloud — your data stays on your machine, privacy protected.
Publication-grade figures
Consistently styled, facet-aware plots with interactive preview and high-resolution export, ready for manuscripts and presentations.
AI-assisted analysis
AI models help edit figures and more.
Automatic code generation
Clicks generate code as you work, for reproducible analysis and manuscript writing.
Innovative methods
Adds downstream data-mining operations such as genomic analysis and multi-omics integration.
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Get MecoToolkit
MecoToolkit is distributed through this page only.
Download MecoToolkit
Download the latest release and start analysing your microbiome data through an interactive interface.
Windows version:
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